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  "Title": "Preparation, Checking and Post-Processing Data for PK/PD\nModeling",
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  "Description": "Efficient tools for preparation, checking and\npost-processing of data in PK/PD\n(pharmacokinetics/pharmacodynamics) modeling, with focus on use\nof Nonmem, including consistency, traceability, and Nonmem\ncompatibility of Data. Rigorously checks final Nonmem datasets.\nImplemented in 'data.table', but easily integrated with 'base'\nand 'tidyverse'.",
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  "_exports": [
    "addCor",
    "addOmegaCorr",
    "addTAPD",
    "as.NMctl",
    "cc",
    "cl",
    "cleanFileNames",
    "colLabels",
    "compareCols",
    "dcastSe",
    "dims",
    "dt2mat",
    "dtapply",
    "editCharCols",
    "egdt",
    "findCovs",
    "findVars",
    "flagsAssign",
    "flagsCount",
    "fnAppend",
    "fnExtension",
    "is.NMdata",
    "lapplydt",
    "listMissings",
    "mat2dt",
    "mergeCheck",
    "mergeCoal",
    "NMcheckColnames",
    "NMcheckData",
    "NMdataConf",
    "NMexpandDoses",
    "NMextractDataFile",
    "NMextractText",
    "NMgenText",
    "NMinfo",
    "NMisNumeric",
    "NMorderColumns",
    "NMreadCov",
    "NMreadCsv",
    "NMreadExt",
    "NMreadFilters",
    "NMreadInits",
    "NMreadParsText",
    "NMreadPhi",
    "NMreadSection",
    "NMreadShk",
    "NMreadSizes",
    "NMreadTab",
    "NMrelate",
    "NMreplaceDataFile",
    "NMscanData",
    "NMscanInput",
    "NMscanMultiple",
    "NMscanTables",
    "NMstamp",
    "NMwriteData",
    "NMwriteSection",
    "readCtl",
    "renameByContents",
    "setOrderList",
    "tmpcol",
    "triagSize",
    "uniquePresent",
    "unNMdata"
  ],
  "_help": [
    {
      "page": "addCor",
      "title": "add correlations of off-diagonal OMEGA and SIGMA elements to a parameter table",
      "topics": [
        "addCor"
      ]
    },
    {
      "page": "addOmegaCorr",
      "title": "Deprecated: use addCor. Add correlations to parameter table",
      "topics": [
        "addOmegaCorr"
      ]
    },
    {
      "page": "addTAPD",
      "title": "Add time since previous dose to data, time of previous dose, most recent dose amount, cumulative number of doses, and cumulative dose amount.",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "addTAPD"
      ]
    },
    {
      "page": "as.NMctl",
      "title": "Convert object to class NMctl",
      "topics": [
        "as.NMctl"
      ]
    },
    {
      "page": "cc",
      "title": "Create character vectors without quotation marks",
      "topics": [
        "cc"
      ]
    },
    {
      "page": "cl",
      "title": "Define a vector with factor levels in the same order as occurring in the vector.",
      "topics": [
        "cl"
      ]
    },
    {
      "page": "colLabels",
      "title": "Extract column labels as defined in SAS",
      "topics": [
        "colLabels"
      ]
    },
    {
      "page": "compareCols",
      "title": "Compare elements in lists with aim of combining",
      "concept": [
        "DataWrangling"
      ],
      "topics": [
        "compareCols"
      ]
    },
    {
      "page": "dcastSe",
      "title": "A standard-evaluation interface to `data.table::dcast()",
      "topics": [
        "dcastSe"
      ]
    },
    {
      "page": "dims",
      "title": "Get dimensions of multiple objects",
      "concept": [
        "DataWrangling"
      ],
      "topics": [
        "dims"
      ]
    },
    {
      "page": "dt2mat",
      "title": "Convert a data.table of parameter estimates to a matrix",
      "topics": [
        "dt2mat"
      ]
    },
    {
      "page": "dtapply",
      "title": "Apply function and return a data.frame",
      "topics": [
        "dtapply"
      ]
    },
    {
      "page": "editCharCols",
      "title": "Replace strings in character character columns of a data set",
      "topics": [
        "editCharCols"
      ]
    },
    {
      "page": "egdt",
      "title": "Expand grid of data.tables",
      "topics": [
        "egdt"
      ]
    },
    {
      "page": "findCovs",
      "title": "Extract columns that are constant within values of other columns (covariates)",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "findCovs"
      ]
    },
    {
      "page": "findVars",
      "title": "Extract columns that vary within values of other columns in a data.frame",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "findVars"
      ]
    },
    {
      "page": "flagsAssign",
      "title": "Assign exclusion flags to a dataset based on specified table",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "flagsAssign"
      ]
    },
    {
      "page": "flagsCount",
      "title": "Create an overview of number of retained and discarded datapoints.",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "flagsCount"
      ]
    },
    {
      "page": "fnAppend",
      "title": "paste something before file name extension.",
      "topics": [
        "fnAppend"
      ]
    },
    {
      "page": "fnExtension",
      "title": "Change file name extension",
      "topics": [
        "fnExtension"
      ]
    },
    {
      "page": "is.NMdata",
      "title": "Check if an object is 'NMdata'",
      "topics": [
        "is.NMdata"
      ]
    },
    {
      "page": "lapplydt",
      "title": "Apply function of subsets of `data.frame`, return named list",
      "topics": [
        "lapplydt"
      ]
    },
    {
      "page": "listMissings",
      "title": "List rows with missing values across multiple columns",
      "concept": [
        "DataWrangling"
      ],
      "topics": [
        "listMissings"
      ]
    },
    {
      "page": "mat2dt",
      "title": "upper or lower triangle or all values of a matrix as long-format",
      "topics": [
        "mat2dt"
      ]
    },
    {
      "page": "mergeCheck",
      "title": "Merge, order, and check resulting rows and columns.",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "mergeCheck"
      ]
    },
    {
      "page": "mergeCoal",
      "title": "Overwrite values in one data.frame as available in another.",
      "topics": [
        "mergeCoal"
      ]
    },
    {
      "page": "NMcheckColnames",
      "title": "Compare $INPUT in control stream to column names in input data",
      "concept": [
        "debug"
      ],
      "topics": [
        "NMcheckColnames"
      ]
    },
    {
      "page": "NMcheckData",
      "title": "Check data for Nonmem compatibility or check control stream for data compatibility",
      "topics": [
        "NMcheckData"
      ]
    },
    {
      "page": "NMdataConf",
      "title": "Configure default behavior of NMdata functions",
      "topics": [
        "NMdataConf"
      ]
    },
    {
      "page": "NMdataOperations",
      "title": "Basic arithmetic on NMdata objects",
      "topics": [
        "cbind.NMdata",
        "dimnames.NMdata",
        "merge.NMdata",
        "NMdataOperations",
        "rbind.NMdata",
        "t.NMdata"
      ]
    },
    {
      "page": "NMexpandDoses",
      "title": "Transform repeated dosing events (ADDL/II) to individual dosing events",
      "topics": [
        "NMexpandDoses"
      ]
    },
    {
      "page": "NMextractDataFile",
      "title": "Extract the data file used in a control stream",
      "topics": [
        "NMextractDataFile"
      ]
    },
    {
      "page": "NMextractText",
      "title": "Versatile text extractor from Nonmem (input or output) control streams",
      "concept": [
        "Nonmem"
      ],
      "topics": [
        "NMextractText"
      ]
    },
    {
      "page": "NMgenText",
      "title": "Generate text for INPUT and possibly DATA sections of NONMEM control streams.",
      "concept": [
        "Nonmem"
      ],
      "topics": [
        "NMgenText"
      ]
    },
    {
      "page": "NMinfo",
      "title": "Get metadata from an NMdata object",
      "topics": [
        "NMinfo"
      ]
    },
    {
      "page": "NMisNumeric",
      "title": "Test if a variable can be interpreted by Nonmem",
      "topics": [
        "NMisNumeric"
      ]
    },
    {
      "page": "NMorderColumns",
      "title": "Standardize column order in Nonmem input data",
      "concept": [
        "DataCreate"
      ],
      "topics": [
        "NMorderColumns"
      ]
    },
    {
      "page": "NMreadCov",
      "title": "Read covariance matrix from `.cov` file",
      "topics": [
        "NMreadCov"
      ]
    },
    {
      "page": "NMreadCsv",
      "title": "Read input data formatted for Nonmem",
      "concept": [
        "DataRead"
      ],
      "topics": [
        "NMreadCsv"
      ]
    },
    {
      "page": "NMreadExt",
      "title": "Read information from Nonmem ext files",
      "topics": [
        "NMreadExt"
      ]
    },
    {
      "page": "NMreadFilters",
      "title": "Read data filters from a NONMEM model",
      "topics": [
        "NMreadFilters"
      ]
    },
    {
      "page": "NMreadInits",
      "title": "Tabulate information from parameter sections in control streams",
      "topics": [
        "NMreadInits"
      ]
    },
    {
      "page": "NMreadParsText",
      "title": "Read comments to parameter definitions in Nonmem control streams",
      "topics": [
        "NMreadParsText"
      ]
    },
    {
      "page": "NMreadPhi",
      "title": "Read information from Nonmem phi files",
      "topics": [
        "NMreadPhi"
      ]
    },
    {
      "page": "NMreadSection",
      "title": "Extract sections of Nonmem control streams",
      "concept": [
        "Nonmem"
      ],
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